Yong Zhang (yzhang37)

Yong Zhang

Professor

Charles V. Schaefer, Jr. School of Engineering and Science

Department of Chemistry and Chemical Biology

McLean Hall 312
(201) 216-5513
(201) 216-8196

Education

  • PhD (1997) Nanjing University (Chemistry)
  • BS (1993) Nanjing University (Chemistry)

Research

High Accuracy Computational Chemistry to Help Solve Experimental Problems

Our research focuses on developing and utilizing computational methods to provide accurate information for molecular and biomolecular systems, particularly those of broad impact on biomedicine and sustainable chemistry. Our high accuracy computational results with errors typically within 1-3% experimental ranges build a strong basis to provide critical missing information to help understand important experimental data, correct experimental errors, and guide future experiments with better desired properties/functions.

Our prior research has enabled 1) unprecedented mechanistic details for >100 reactions of important therapeutic agents, proteins of clinical interest, and green catalysts/biocatalysts. 2) accurate predictions of ~20 widely used spectroscopic properties with theory-versus-experiment correlation coefficient R2 around 0.99; 3) structure refinement and determination for active sites of ~20 metalloproteins with accuracy like small molecules. Among a total of 142 published/accepted papers, 53 are in top journals. The average journal impact factor of all his papers published at US tenured/tenure-track positions is 8.2. The complete list of the publications is here: https://scholar.google.com/citations?user=hDumUHUAAAAJ&hl=en

Our current research interests are mainly in the following areas:

1) Computational mechanistic studies of bioengineered catalysts with artificial functions for sustainable chemistry. One important topic to help make our earth sustainable is to develop inexpensive non-toxic catalysts to perform highly reactive and selective atom-economic chemical transformations for materials, drugs, and other useful substances, at room temperature and ambient pressure, in aqueous solution. Novel heme protein-based biocatalysts exhibit excellent catalytic performance for a wide range of non-native chemical reactions. A recent Nobel Prize was awarded to a few experimental pioneers in this field. Our group has provided some first and significant mechanistic insights into the electronic structures of heme carbenes and the origins of their reactivity, stereoselectivity, and chemoselectivity results in cyclopropanation, C-H insertion, N-H insertion, and Si-H insertion.

2) AI predictions of molecular/biomolecular properties and chemical/biochemical reactions. AI has been transforming the research field with two Nobel Prizes being recently awarded. However, AI tools in chemistry areas are mostly known for fast predictions but with significantly less accuracy than quantum chemistry predictions, especially for systems beyond normal organic molecules. Building on our previous strength in high accuracy predictions of experimental properties, we are developing new AI methods particularly deep learning approaches to improve the accuracy toward the quantum chemistry level while keeping its speedy feature.

3) Computational investigations of metalloprotein/metal mediated binding, formation, conversion, and detection of biological HNO and NO. These small molecules play vital roles in the cellular survival and signaling/regulation activities. Studies of NO’s effects in biomedicine have been awarded Nobel Prize. Our group has been providing some previously unknown critical structural and mechanistic information in this area, such as the first atomic level HNO bound protein active site structure, first heme and non-heme protein mediated HNO to NO conversion mechanistic pathway details, and first metal-based selective HNO sensor's reactivity mechanism, and first non-native one-electron reduction reactivity mechanism for NO in models of nitric oxide reductases.

4) Quantum chemical studies of accurate drug binding structures and pro-drug activation mechanisms. There are difficulties in obtaining x-ray structures of many drug-biomolecule complexes and accuracy problems of conventional x-ray crystallography. Our group provided accurate structures of important bisphosphonate-protein complexes and their associate interaction modes to help find new drug leads and understand their drug activity and selectivity. Such drugs have a billion-dollar global pharmaceutical market and exhibit excellent activities in treating bone-resorption diseases, Paget’s disease, and cancer. Our group revealed the activation mechanism of the bestseller anticancer prodrug cisplatin and studied prodrugs for HNO. We are exploring mechanisms of new types of drugs.

Current Group Members

Graduate student:
Somayeh Tavasolikejani
Daisy Morgan

Undergraduate student:
Vrinda Modi
Ioannis Skoulidas
Lina Temimi

A total of 22 graduate and 41 undergraduate students have been trained for research in this group, including 65% from underrepresented groups (women and minorities).

After receiving the training in this lab at Stevens, all PhD students won some awards and many undergraduate students won up to 7 awards and scholarships, including national level honors such as ACS Division of Physical Chemistry Undergraduate Award, ACS Division of Inorganic Chemistry Undergraduate Award, and one of only 25 Physical Chemistry students nationwide selected to present at ACS national meetings.

Many students have publications in prestigious or even top journals, including undergraduate students.

For those who went to graduate and medical schools, each receives up to 7 offers from prominent universities such as Yale, John Hopkins, Cornell/Rochefeller/MSK, UCLA, University of Michigan, New York University, Rutgers.

In addition, a number of students become scientists and professors in academia or industry after graduation from this lab.

The following is a list of selected students featured on Stevens news:
Jia-Min Chu
https://www.stevens.edu/news/chemical-biology-phd-alumni-biopharma

Dariya Baizhigitova
https://www.stevens.edu/news/global-citizen-dariya-baizhigitova-24
https://www.stevens.edu/news/stevens-seniors-ai-technologies

Erika McCarthy
https://www.stevens.edu/news/when-diligence-meets-passion-decorated-class-2021-ccb-student-accepted-prestigious-phd-program

Undergraduate and graduate students with strong motivations are welcome to contact Professor Yong Zhang regarding the potential opportunity of joining his group's interesting and rewarding scientific endeavors.

Equipment:

This lab has a computational cluster in the university's Data Center with 436 cores, 1014 GB RAM, and 7.2 TB hard drive, with additional access to a school computational cluster of 880 cores, 4160 GB RAM, and 240 TB hard drive. Each student has a high-performance PC.

General Information

Dr. Yong Zhang is a tenured full Professor in the Department of Chemistry and Chemical Biology at Stevens. He has more than 30 years experience in academia, where he has published >140 journal papers including > 1/3 in top journals and delivered ~150 seminars and conference presentations. He has been awarded ~50 research grants, primarily as Principal Investigator. Dr. Zhang has also supervised 22 graduate and 40 undergraduate students.

Experience

Stevens Institute of Technology
2019-present Professor
2010-2019 Associate Professor (tenured in 2015)
University of Southern Mississippi
2007-2010 Assistant Professor
University of Illinois Urbana-Champaign
2005-2007 Research Scientist
2000-2005 Postdoctoral Research Associate
Nanjing University
1999-2000 Associate Professor

Institutional Service

  • School of Engineering and Science Dean’s Faculty Advisory Council Member
  • Internal Review Committee for the Chair of the Department of Chemistry and Chemical Biology Chair
  • University Committee on Promotions and Tenure Member
  • CCB Nominating Committee Chair
  • School of Engineering and Science Research Committee Member
  • CCB Graduate Admission Committee Member
  • Undergraduate Chemistry Task Force Member
  • MS in Chemistry Task Force Member
  • Tenure Stream Faculty Search Committee Chair
  • Tenure Stream Faculty Search Committee Chair
  • CCB Undergraduate Education Committee Member
  • School of Engineering and Science Advanced Computing Advisory Group Member
  • School of Engineering and Science Honors and Awards Committee Member
  • CCB Research and Infrastructure Committee Member
  • Computational Biology Search Committee Chair
  • Teaching Assistant Professor Search Committee Member
  • Biology Lecturer Search Committee Member
  • Academic Planning and Resources Committee Member

Professional Service

  • DOE Grant Reviewer
  • NSF Grant Reviewer
  • JACS Au Journal Reviewer
  • JACS Au Journal Reviewer
  • NSF Grant Reviewer
  • NIH study section MSFA Grant Reviewer
  • Nature Catalysis Journal Reviewer
  • ChemBioChem Journal Reviewer
  • Nature Catalysis Journal Reviewer
  • Nature Catalysis Journal Reviewer
  • American Chemical Society National Meeting 2023 Spring Chair of session: Organic Chemistry
  • American Chemical Society National Meeting 2023 Spring Chair of session: Bioinorganic Chemistry, Energy, and the Environment
  • Journal of the American Chemical Society Journal Reviewer
  • Journal of the American Chemical Society Journal Reviewer
  • Journal of the American Chemical Society Journal Reviewer
  • NSF Grant Reviewer
  • Chemical Science Journal Reviewer
  • Coordination Chemistry Reviews Journal Reviewer
  • ACS Catalysis Journal Reviewer
  • American Chemical Society National Meeting 2021 Spring Chair of session: Bioinorganic Chemistry
  • Journal of the American Chemical Society Journal Reviewer
  • Physical Chemistry Chemical Physics Journal Reviewer
  • Physical Chemistry Chemical Physics Journal Reviewer
  • Stanford Synchrotron Radiation Lightsource Proposal Reviewer
  • Journal of the American Chemical Society Journal Reviewer
  • Inorganic Chemistry Journal Reviewer
  • ChemPlusChem Journal Reviewer
  • Inorganic Chemistry Journal Reviewer
  • ACS Catalysis Journal Reviewer
  • ACS Catalysis Journal Reviewer
  • Dalton Transactions Journal Reviewer
  • Inorganica Chimica Acta Journal Reviewer
  • NIH Director’s Pioneer Award Program Grant Reviewer
  • Dalton Transactions Journal Reviewer
  • Inorganica Chimica Acta Journal Reviewer
  • Coordination Chemistry Reviews Journal Reviewer
  • 2nd Annual Conference of Quantum World Session Chair

Honors and Awards

2024 Recognition of Outstanding Teaching Evaluation, Office of the Senior Vice Provost for Academic Innovation and Faculty Affairs, Stevens Institute of Technology
2024 Doctoral Incentive Award, Stevens Institute of Technology
2022 Recognition of Outstanding Teaching Evaluation, Office of the Vice Provost for Academic Innovation and Faculty Affairs, Stevens Institute of Technology
2022 Doctoral Incentive Award, Stevens Institute of Technology
2021 Pandemic Employee Appreciation Award, Stevens Institute of Technology
2020 Recognition of Outstanding Teaching Evaluation, Office of the Vice Provost for Academic Innovation and Faculty Affairs, Stevens Institute of Technology
2018 Recognition of Outstanding Teaching Evaluation, Office of the Vice Provost for Academics, Stevens Institute of Technology
2017 Recognition of Outstanding Teaching Evaluation, Office of the Vice Provost for Academics, Stevens Institute of Technology
2016 Certificate of Recognition, American Chemical Society Publications
2015 Certificate of Recognition, American Chemical Society Publications
2015 Certificate of Recognition as an ACS Chemistry Ambassador, American Chemical Society Committee on Public Relations and Communications
2013 Certificate of Recognition as an ACS Chemistry Ambassador, American Chemical Society Committee on Public Relations and Communications
2011 Certificate of Appreciation, American Chemical Society Publications
2009 Aubrey Keith Lucas and Ella Ginn Lucas Endowment for Faculty Excellence Awards, University of Southern Mississippi
2007 Award from the Academic Professional Development Fund, University of Illinois at Urbana-Champaign
2007 Travel Award from the Chair’s Fund of Gordon Research Conferences
2004 National Second-class Award of Natural Sciences, China (the most prestigious national award for scientific achievement; there were no first-class award recipients in 2004)
2002 National First-class Award for the Advancement of Science and Technology, Ministry of Education, China
2000 National Award for University Key Teachers, Ministry of Education, China
1999 Star-of-Hope Research and Teaching Award for the Young Faculty, Nanjing University, China
1997 Chinese Post-doctoral Science Foundation Fellow, China
1994 Austrian-Thai Center for Computer-Assisted Chemical Education and Research Fellow, Austria

Professional Societies

  • American Chemical Society Member
  • American Association for the Advancement of Science Member
  • Society of Biological Inorganic Chemistry Member
  • Society of Porphyrins and Phthalocyanines Member

Grants, Contracts and Funds

46) 6/2025-8/2025, role: PI, AI Research in Summer (AIRS) Fellowship Program from Stevens Institute for Artificial Intelligence, “AI predictions of molecular/biomolecular properties as structural fingerprints”.
45) 7/2024-6/2025, role: PI, open grant from Stevens Institute of Technology to support two undergraduate students’ research.
44) 7/2024-6/2025, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
43) 7/2024-6/2025, role: PI, Doctoral Incentive Award, Office of the Vice Provost for Graduate Education, Stevens Institute of Technology, open grant to support the research group.
42) 1/2024-6/2024, role: PI, open grant from Stevens Institute of Technology to support five undergraduate students’ research.
41) 7/2023-6/2024, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
40) 7/2022-6/2023, role: PI, subaward from New Jersey Opportunity Meets Innovation Challenge Grant to Stevens Institute of Technology, open grant to support three undergraduate students’ research.
39) 7/2022-6/2023, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
38) 7/2022-6/2023, role: PI, Doctoral Incentive Award, Office of the Vice Provost for Graduate Education, Stevens Institute of Technology, open grant to support the research group.
37) 7/2021-6/2022, role: PI, subaward from New Jersey Opportunity Meets Innovation Challenge Grant to Stevens Institute of Technology, open grant to support four undergraduate students’ research.
36) 8/2021-7/2024, role: PI, NIH 2R15GM085774-05, “Molecular mechanisms of metal-mediated biological functions for NO, O2, and HNO”.
35) 7/2021-6/2022, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
34) 6/2021-5/2024, role: PI, NSF CHE-2054897, “CAS: Mechanistic Investigation of Heme-based Catalysts for Sustainable Carbene Transfer Reactions”.
33) 4/2021-3/2025, role: PI, sub-award from NIH R01GM098628A2-10, “Metalloprotein Catalysts for Asymmetric Synthesis”.
32) 7/2020-6/2021, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
31) 7/2019-6/2020, role: PI, Center for Healthcare Innovation, Stevens Institute of Technology, “Mechanistic Investigation of the Formation of a Signaling Molecule from Drug”.
30) 7/2019-6/2020, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
29) 7/2018-6/2019, role: PI, Center for Healthcare Innovation, Stevens Institute of Technology, “Mechanistic Investigation of Sustainable Biocatalytic Synthesis of Cyclopropanes”.
28) 7/2018-6/2019, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
27) 2/2018-5/2018, role: PI, Dean’s Laboratory Improvement Fund, School of Science and Engineering, Stevens Institute of Technology.
26) 8/2017-3/2021, role: PI, sub-award from NIH 2R01GM098628-06, “Metalloprotein Catalysts for Asymmetric Synthesis”.
25) 9/2017-6/2018, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
24) 7/2017-6/2021, role: PI, NIH 2R15GM085774-04, “Metal-mediated Biological HNO Formation, Conversion, and Detection”.
23) 9/2016-6/2017, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
22) 7/2016-6/2017, role: PI, Center for Healthcare Innovation, Stevens Institute of Technology, “Computational Study of Highly Efficient and Selective Catalysts for Green Chemistry”.
21) 7/2016-6/2017, role: PI, Center for Healthcare Innovation, Stevens Institute of Technology, “Mechanistic Study of Catalyst Metal Center Effect for New C-N Bond Formation”.
20) 8/2015-6/2016, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
19) 6/2013-5/2018, role: PI, NSF CHE-1300912, “SusChEM: Selective C-H Functionalization by Highly Tunable Metalloporphyrin Carbenoid: A Mechanistic Investigation”.
18) 1/2013-12/2016, role: PI, NIH 2R15GM085774-03, “HNO Interactions with Metalloproteins: Structures and Mechanisms”.
17) 8/2014-6/2015, role: PI, Research Incentive Award, Office of the Vice Provost for Research, Stevens Institute of Technology, open grant to stimulate research.
16) 7/2014-6/2015, role: PI, Center for Healthcare Innovation, Stevens Institute of Technology, “Transforming Greenhouse Gas N2O into Useful Green Chemical Synthesis Material”.
15) 6/2014-2/2015, role: co-PI, Ignition Grant Initiative, Office of the Vice Provost for Research, Stevens Institute of Technology, “Dynamically Responsive Infection-Resisting Biomaterial”.
14) 7/2013-6/2014, role: PI, Center for Healthcare Innovation, Stevens Institute of Technology, “Reaction Mechanisms of Copper-based Fluorescent Probes for Nitric Oxide”.
13) 8/2010-6/2012, role: PI, NIH 7R15GM085774-02, “Structure, Spectra, and Roles of Metal and Active Site in HNO Heme Protein Complex”.
12) 7/2008-7/2010, role: PI, NIH 1R15GM085774-01, “Structure, Spectra, and Roles of Metal and Active Site in HNO Heme Protein Complex”.
11) 5/2009-4/2010, role: PI, Aubrey Keith Lucas and Ella Ginn Lucas Endowment for Faculty Excellence Awards, University of Southern Mississippi, “Modeling the Detoxifying Enzyme Intermediates”.
10) 7/2008-8/2008, role: PI, Summer Faculty Research Grant, University of Southern Mississippi, “Exploring the Structure of the Common Octa-Repeat Copper-Binding Site in Mammalian Prion Proteins Involved in Neurodegenerative Diseases”.
9) 8/2007-10/2009, role: PI, subaward from NSF EPSCoR award OIA-0556308, “Innovations through computational chemistry”.
8) 9/2006-9/2007, role: PI, National Computational Science Alliance (USA), Grant No. TG-MCB060084N, “Quantum Chemical Studies on NMR Hyperfine Shifts and Structures of Blue Copper Proteins”.
7) 6/2004-9/2005, role: PI, National Computational Science Alliance (USA), Grant No. MCB040045N, “Ab initio Studies on 31P NMR Chemical Shifts of Biomimetic Pentacoordinate Oxyphosphoranes”.
6) 11/2002-10/2003, role: PI, National Computational Science Alliance (USA), Grant No. MCB030001N, “Density Functional Studies on Paramagnetic Metalloproteins and Model Compounds”.
5) 05/2001-05/2002, role: PI, National Computational Science Alliance (USA), Grant No. MCB010016N, “Density Functional Studies on Paramagnetic Heme Proteins and Models”.
4) 01/2000-12/2001, role: PI, a national award from the Foundation for University Key Teachers, Ministry of Education (China). “Design and Properties of Novel Alternated Molecular Functional Films”.
3) 01/1998-12/2002, role: co-PI, subaward from State Key Project of the Fundamental Research, Ministry of Science and Technology (China), Grant No. G1998061321.“Studies on the Optoelectric Functional Materials of Rare-earth Organic-Inorganic Hybrid Polymers”.
2) 01/1999-12/2001, role: PI, Nanjing University Talent Development Foundation (China), “Preparation, Electron and Energy Transfer Studies on Novel Functional Films of Coordination Compounds”.
1) 06/1997-01/1999, role: PI, National Post-doctoral Science Foundation (China), Grant No. 1997[11], “Theoretical Studies on Supramolecular Systems with Special Physical, Chemical and Biological Properties”.

Selected Publications

Journal Article

  1. Couture, B. M.; Cui, R.; Chu, J. M.; Shen, Z.; Khare, S. D.; Zhang, Y.; Fasan, R. (2024). Radical-mediated regiodivergent C(sp3)–H functionalization of N-substituted indolines via enzymatic carbene transfer. Chem Catalysis (11 ed., vol. 4).
  2. Roy, S.; Wang, Y.; Zhao, X.; Dayananda, T.; Chu, J. M.; Zhang, Y.; Fasan, R. (2024). Stereodivergent Synthesis of Pyridyl Cyclopropanes via Enzymatic Activation of Pyridotriazoles. Journal of the American Chemical Society (29 ed., vol. 146, pp. 19673-19679).
    https://pubs.acs.org/doi/abs/10.1021/jacs.4c06103.
  3. Nam, D.; Bacik, J. P.; Khade, R.; Aguilera, M. C.; Wei, Y.; Villada, J. D.; Neidig, M. L.; Zhang, Y.; Ando, N.; Fasan, R. (2023). Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone. Nature Communications (1 ed., vol. 14).
    https://www.nature.com/articles/s41467-023-43559-7.
  4. Wang, J.; Sun, J.; Khade, R.; Chou, T.; An, H.; Zhang, Y.; Wang, H. (2023). Liposome-Templated Green Synthesis of Mesoporous Metal Nanostructures with Universal Composition for Biomedical Application. Small (46 ed., vol. 19).
    https://onlinelibrary.wiley.com/doi/abs/10.1002/smll.202304880.
  5. Shi, Y.; Stella, G.; Chu, J. M.; Zhang, Y. (2022). Mechanistic Origin of Favorable Substituent Effects in Excellent Cu Cyclam Based HNO Sensors. Angewandte Chemie - International Edition (45 ed., vol. 61).
    https://onlinelibrary.wiley.com/doi/full/10.1002/anie.202211450.
  6. Tian, S.; Fan, R.; Albert, T.; Khade, R. L.; Dai, H.; Harnden, K. A.; Hosseinzadeh, P.; Liu, J.; Nilges, M. J.; Zhang, Y.; Moënne-Loccoz, P.; Guo, Y.; Lu, Y. (2021). Stepwise nitrosylation of the nonheme iron site in an engineered azurin and a molecular basis for nitric oxide signaling mediated by nonheme iron proteins. Chemical Science (19 ed., vol. 12, pp. 6569-6579).
    https://pubs.rsc.org/en/content/articlelanding/2021/sc/d1sc00364j.
  7. Abucayon, E. G.; Khade, R. L.; Powell, D. R.; Zhang, Y.; Richter-Addo, G. B. (2019). Not Limited to Iron: A Cobalt Heme--NO Model Facilitates N--N Coupling with External NO in the Presence of a Lewis Acid to Generate N2O. Angewandte Chemie International Edition (51 ed., vol. 58, pp. 18598--18603). German Chemical Society.
    https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.201909137.
  8. Vargas, D. A.; Khade, R. L.; Zhang, Y.; Fasan, R. (2019). Biocatalytic Strategy for Highly Diastereo- and Enantioselective Synthesis of 2,3-Dihydrobenzofuran-Based Tricyclic Scaffolds. Angewandte Chemie - International Edition (30 ed., vol. 58, pp. 10148-10152).
    https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.201903455.
  9. Tinoco, A.; Wei, Y.; Bacik, J. P.; Carminati, D. M.; Moore, E. J.; Ando, N.; Zhang, Y.; Fasan, R. (2019). Origin of High Stereocontrol in Olefin Cyclopropanation Catalyzed by an Engineered Carbene Transferase. ACS Catalysis (2 ed., vol. 9, pp. 1514-1524).
    https://pubs.acs.org/doi/10.1021/acscatal.8b04073.
  10. Selvan, D.; Prasad, P.; Farquhar, E. R.; Shi, Y.; Crane, S.; Zhang, Y.; Chakraborty, S. (2019). Redesign of a Copper Storage Protein into an Artificial Hydrogenase. ACS Catalysis (pp. 5847-5859).
    https://pubs.acs.org/doi/abs/10.1021/acscatal.9b00360.
  11. Shi, Y.; Zhang, Y. (2018). Mechanisms of HNO Reactions with Ferric Heme Proteins. Angewandte Chemie - International Edition (51 ed., vol. 57, pp. 16654-16658).
    https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.201807699.
  12. Malwal, S. R.; O'Dowd, B.; Feng, X.; Turhanen, P.; Shin, C.; Yao, J.; Kim, B. K.; Baig, N.; Zhou, T.; Bansal, S.; Khade, R. L.; Zhang, Y.; Oldfield, E. (2018). Bisphosphonate-Generated ATP-Analogs Inhibit Cell Signaling Pathways. Journal of the American Chemical Society (24 ed., vol. 140, pp. 7568-7578).
    https://pubs.acs.org/doi/10.1021/jacs.8b02363.
  13. Bhagi-Damodaran, A.; Reed, J. H.; Zhu, Q.; Shi, Y.; Hosseinzadeh, P.; Sandoval, B. A.; Harnden, K. A.; Wang, S.; Sponholtz, M. R.; Mirts, E. N.; Dwaraknath, S.; Zhang, Y.; Moënne-Loccoz, P.; Lu, Y. (2018). Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase. Proceedings of the National Academy of Sciences of the United States of America (24 ed., vol. 115, pp. 6195-6200).
    https://www.pnas.org/content/115/24/6195.full.
  14. Malwal, S. R.; Gao, J.; Hu, X.; Yang, Y.; Liu, W.; Huang, J. W.; Ko, T. P.; Li, L.; Chen, C. C.; O'Dowd, B.; Khade, R. L.; Zhang, Y.; Zhang, Y.; Oldfield, E.; Guo, R. T. (2018). Catalytic Role of Conserved Asparagine, Glutamine, Serine, and Tyrosine Residues in Isoprenoid Biosynthesis Enzymes. ACS Catalysis (5 ed., vol. 8, pp. 4299-4312).
    https://pubs.acs.org/doi/10.1021/acscatal.8b00543.
  15. Abucayon, E. G.; Khade, R. L.; Powell, D. R.; Zhang, Y.; Richter-Addo, G. B. (2018). Lewis Acid Activation of the Ferrous Heme-NO Fragment toward the N-N Coupling Reaction with NO to Generate N2O. Journal of the American Chemical Society (12 ed., vol. 140, pp. 4204-4207).
    https://pubs.acs.org/doi/10.1021/jacs.7b13681.
  16. Wei, Y.; Tinoco, A.; Steck, V.; Fasan, R.; Zhang, Y. (2018). Cyclopropanations via Heme Carbenes: Basic Mechanism and Effects of Carbene Substituent, Protein Axial Ligand, and Porphyrin Substitution. Journal of the American Chemical Society (5 ed., vol. 140, pp. 1649-1662).
    https://pubs.acs.org/doi/10.1021/jacs.7b09171.
  17. Reed, J. H.; Shi, Y.; Zhu, Q.; Chakraborty, S.; Mirts, E. N.; Petrik, I. D.; Bhagi-Damodaran, A.; Ross, M.; Moënne-Loccoz, P.; Zhang, Y.; Lu, Y. (2017). Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism. Journal of the American Chemical Society (35 ed., vol. 139, pp. 12209-12218).
    https://pubs.acs.org/doi/10.1021/jacs.7b05800.
  18. Bhagi-Damodaran, A.; Kahle, M.; Shi, Y.; Zhang, Y.; Ädelroth, P.; Lu, Y. (2017). Insights Into How Heme Reduction Potentials Modulate Enzymatic Activities of a Myoglobin-based Functional Oxidase. Angewandte Chemie - International Edition (23 ed., vol. 56, pp. 6622-6626).
    https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.201701916.
  19. Bhagi-Damodaran, A.; Michael, M. A.; Zhu, Q.; Reed, J.; Sandoval, B. A.; Mirts, E. N.; Chakraborty, S.; Moënne-Loccoz, P.; Zhang, Y.; Lu, Y. (2017). Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases. Nature Chemistry (3 ed., vol. 9, pp. 257-263).
    https://www.nature.com/articles/nchem.2643.

Courses

CH 322 Theoretical Chemistry
CH 421 Chemical Dynamics
CH 520 Advanced Physical Chemistry
CH 669 Applied Quantum Chemistry